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+/*
+ * Copyright (c) 1999-2000 Image Power, Inc. and the University of
+ *   British Columbia.
+ * Copyright (c) 2001-2002 Michael David Adams.
+ * All rights reserved.
+ */
+
+/* __START_OF_JASPER_LICENSE__
+ * 
+ * JasPer Software License
+ * 
+ * IMAGE POWER JPEG-2000 PUBLIC LICENSE
+ * ************************************
+ * 
+ * GRANT:
+ * 
+ * Permission is hereby granted, free of charge, to any person (the "User")
+ * obtaining a copy of this software and associated documentation, to deal
+ * in the JasPer Software without restriction, including without limitation
+ * the right to use, copy, modify, merge, publish, distribute, sublicense,
+ * and/or sell copies of the JasPer Software (in source and binary forms),
+ * and to permit persons to whom the JasPer Software is furnished to do so,
+ * provided further that the License Conditions below are met.
+ * 
+ * License Conditions
+ * ******************
+ * 
+ * A.  Redistributions of source code must retain the above copyright notice,
+ * and this list of conditions, and the following disclaimer.
+ * 
+ * B.  Redistributions in binary form must reproduce the above copyright
+ * notice, and this list of conditions, and the following disclaimer in
+ * the documentation and/or other materials provided with the distribution.
+ * 
+ * C.  Neither the name of Image Power, Inc. nor any other contributor
+ * (including, but not limited to, the University of British Columbia and
+ * Michael David Adams) may be used to endorse or promote products derived
+ * from this software without specific prior written permission.
+ * 
+ * D.  User agrees that it shall not commence any action against Image Power,
+ * Inc., the University of British Columbia, Michael David Adams, or any
+ * other contributors (collectively "Licensors") for infringement of any
+ * intellectual property rights ("IPR") held by the User in respect of any
+ * technology that User owns or has a right to license or sublicense and
+ * which is an element required in order to claim compliance with ISO/IEC
+ * 15444-1 (i.e., JPEG-2000 Part 1).  "IPR" means all intellectual property
+ * rights worldwide arising under statutory or common law, and whether
+ * or not perfected, including, without limitation, all (i) patents and
+ * patent applications owned or licensable by User; (ii) rights associated
+ * with works of authorship including copyrights, copyright applications,
+ * copyright registrations, mask work rights, mask work applications,
+ * mask work registrations; (iii) rights relating to the protection of
+ * trade secrets and confidential information; (iv) any right analogous
+ * to those set forth in subsections (i), (ii), or (iii) and any other
+ * proprietary rights relating to intangible property (other than trademark,
+ * trade dress, or service mark rights); and (v) divisions, continuations,
+ * renewals, reissues and extensions of the foregoing (as and to the extent
+ * applicable) now existing, hereafter filed, issued or acquired.
+ * 
+ * E.  If User commences an infringement action against any Licensor(s) then
+ * such Licensor(s) shall have the right to terminate User's license and
+ * all sublicenses that have been granted hereunder by User to other parties.
+ * 
+ * F.  This software is for use only in hardware or software products that
+ * are compliant with ISO/IEC 15444-1 (i.e., JPEG-2000 Part 1).  No license
+ * or right to this Software is granted for products that do not comply
+ * with ISO/IEC 15444-1.  The JPEG-2000 Part 1 standard can be purchased
+ * from the ISO.
+ * 
+ * THIS DISCLAIMER OF WARRANTY CONSTITUTES AN ESSENTIAL PART OF THIS LICENSE.
+ * NO USE OF THE JASPER SOFTWARE IS AUTHORIZED HEREUNDER EXCEPT UNDER
+ * THIS DISCLAIMER.  THE JASPER SOFTWARE IS PROVIDED BY THE LICENSORS AND
+ * CONTRIBUTORS UNDER THIS LICENSE ON AN ``AS-IS'' BASIS, WITHOUT WARRANTY
+ * OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, WITHOUT LIMITATION,
+ * WARRANTIES THAT THE JASPER SOFTWARE IS FREE OF DEFECTS, IS MERCHANTABLE,
+ * IS FIT FOR A PARTICULAR PURPOSE OR IS NON-INFRINGING.  THOSE INTENDING
+ * TO USE THE JASPER SOFTWARE OR MODIFICATIONS THEREOF FOR USE IN HARDWARE
+ * OR SOFTWARE PRODUCTS ARE ADVISED THAT THEIR USE MAY INFRINGE EXISTING
+ * PATENTS, COPYRIGHTS, TRADEMARKS, OR OTHER INTELLECTUAL PROPERTY RIGHTS.
+ * THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE JASPER SOFTWARE
+ * IS WITH THE USER.  SHOULD ANY PART OF THE JASPER SOFTWARE PROVE DEFECTIVE
+ * IN ANY RESPECT, THE USER (AND NOT THE INITIAL DEVELOPERS, THE UNIVERSITY
+ * OF BRITISH COLUMBIA, IMAGE POWER, INC., MICHAEL DAVID ADAMS, OR ANY
+ * OTHER CONTRIBUTOR) SHALL ASSUME THE COST OF ANY NECESSARY SERVICING,
+ * REPAIR OR CORRECTION.  UNDER NO CIRCUMSTANCES AND UNDER NO LEGAL THEORY,
+ * WHETHER TORT (INCLUDING NEGLIGENCE), CONTRACT, OR OTHERWISE, SHALL THE
+ * INITIAL DEVELOPER, THE UNIVERSITY OF BRITISH COLUMBIA, IMAGE POWER, INC.,
+ * MICHAEL DAVID ADAMS, ANY OTHER CONTRIBUTOR, OR ANY DISTRIBUTOR OF THE
+ * JASPER SOFTWARE, OR ANY SUPPLIER OF ANY OF SUCH PARTIES, BE LIABLE TO
+ * THE USER OR ANY OTHER PERSON FOR ANY INDIRECT, SPECIAL, INCIDENTAL, OR
+ * CONSEQUENTIAL DAMAGES OF ANY CHARACTER INCLUDING, WITHOUT LIMITATION,
+ * DAMAGES FOR LOSS OF GOODWILL, WORK STOPPAGE, COMPUTER FAILURE OR
+ * MALFUNCTION, OR ANY AND ALL OTHER COMMERCIAL DAMAGES OR LOSSES, EVEN IF
+ * SUCH PARTY HAD BEEN INFORMED, OR OUGHT TO HAVE KNOWN, OF THE POSSIBILITY
+ * OF SUCH DAMAGES.  THE JASPER SOFTWARE AND UNDERLYING TECHNOLOGY ARE NOT
+ * FAULT-TOLERANT AND ARE NOT DESIGNED, MANUFACTURED OR INTENDED FOR USE OR
+ * RESALE AS ON-LINE CONTROL EQUIPMENT IN HAZARDOUS ENVIRONMENTS REQUIRING
+ * FAIL-SAFE PERFORMANCE, SUCH AS IN THE OPERATION OF NUCLEAR FACILITIES,
+ * AIRCRAFT NAVIGATION OR COMMUNICATION SYSTEMS, AIR TRAFFIC CONTROL, DIRECT
+ * LIFE SUPPORT MACHINES, OR WEAPONS SYSTEMS, IN WHICH THE FAILURE OF THE
+ * JASPER SOFTWARE OR UNDERLYING TECHNOLOGY OR PRODUCT COULD LEAD DIRECTLY
+ * TO DEATH, PERSONAL INJURY, OR SEVERE PHYSICAL OR ENVIRONMENTAL DAMAGE
+ * ("HIGH RISK ACTIVITIES").  LICENSOR SPECIFICALLY DISCLAIMS ANY EXPRESS
+ * OR IMPLIED WARRANTY OF FITNESS FOR HIGH RISK ACTIVITIES.  USER WILL NOT
+ * KNOWINGLY USE, DISTRIBUTE OR RESELL THE JASPER SOFTWARE OR UNDERLYING
+ * TECHNOLOGY OR PRODUCTS FOR HIGH RISK ACTIVITIES AND WILL ENSURE THAT ITS
+ * CUSTOMERS AND END-USERS OF ITS PRODUCTS ARE PROVIDED WITH A COPY OF THE
+ * NOTICE SPECIFIED IN THIS SECTION.
+ * 
+ * __END_OF_JASPER_LICENSE__
+ */
+
+/*
+ * Sequence/Matrix Library
+ *
+ * $Id$
+ */
+
+/******************************************************************************\
+* Includes.
+\******************************************************************************/
+
+#include <stdlib.h>
+#include <assert.h>
+#include <math.h>
+
+#include "jasper/jas_seq.h"
+#include "jasper/jas_malloc.h"
+#include "jasper/jas_math.h"
+
+/******************************************************************************\
+* Constructors and destructors.
+\******************************************************************************/
+
+jas_matrix_t *jas_seq2d_create(int xstart, int ystart, int xend, int yend)
+{
+	jas_matrix_t *matrix;
+	assert(xstart <= xend && ystart <= yend);
+	if (!(matrix = jas_matrix_create(yend - ystart, xend - xstart))) {
+		return 0;
+	}
+	matrix->xstart_ = xstart;
+	matrix->ystart_ = ystart;
+	matrix->xend_ = xend;
+	matrix->yend_ = yend;
+	return matrix;
+}
+
+jas_matrix_t *jas_matrix_create(int numrows, int numcols)
+{
+	jas_matrix_t *matrix;
+	int i;
+
+	if (!(matrix = jas_malloc(sizeof(jas_matrix_t)))) {
+		return 0;
+	}
+	matrix->flags_ = 0;
+	matrix->numrows_ = numrows;
+	matrix->numcols_ = numcols;
+	matrix->rows_ = 0;
+	matrix->maxrows_ = numrows;
+	matrix->data_ = 0;
+	matrix->datasize_ = numrows * numcols;
+
+	if (matrix->maxrows_ > 0) {
+		if (!(matrix->rows_ = jas_malloc(matrix->maxrows_ *
+		  sizeof(jas_seqent_t *)))) {
+			jas_matrix_destroy(matrix);
+			return 0;
+		}
+	}
+
+	if (matrix->datasize_ > 0) {
+		if (!(matrix->data_ = jas_malloc(matrix->datasize_ *
+		  sizeof(jas_seqent_t)))) {
+			jas_matrix_destroy(matrix);
+			return 0;
+		}
+	}
+
+	for (i = 0; i < numrows; ++i) {
+		matrix->rows_[i] = &matrix->data_[i * matrix->numcols_];
+	}
+
+	for (i = 0; i < matrix->datasize_; ++i) {
+		matrix->data_[i] = 0;
+	}
+
+	matrix->xstart_ = 0;
+	matrix->ystart_ = 0;
+	matrix->xend_ = matrix->numcols_;
+	matrix->yend_ = matrix->numrows_;
+
+	return matrix;
+}
+
+void jas_matrix_destroy(jas_matrix_t *matrix)
+{
+	if (matrix->data_) {
+		assert(!(matrix->flags_ & JAS_MATRIX_REF));
+		jas_free(matrix->data_);
+		matrix->data_ = 0;
+	}
+	if (matrix->rows_) {
+		jas_free(matrix->rows_);
+		matrix->rows_ = 0;
+	}
+	jas_free(matrix);
+}
+
+jas_seq2d_t *jas_seq2d_copy(jas_seq2d_t *x)
+{
+	jas_matrix_t *y;
+	int i;
+	int j;
+	y = jas_seq2d_create(jas_seq2d_xstart(x), jas_seq2d_ystart(x), jas_seq2d_xend(x),
+	  jas_seq2d_yend(x));
+	assert(y);
+	for (i = 0; i < x->numrows_; ++i) {
+		for (j = 0; j < x->numcols_; ++j) {
+			*jas_matrix_getref(y, i, j) = jas_matrix_get(x, i, j);
+		}
+	}
+	return y;
+}
+
+jas_matrix_t *jas_matrix_copy(jas_matrix_t *x)
+{
+	jas_matrix_t *y;
+	int i;
+	int j;
+	y = jas_matrix_create(x->numrows_, x->numcols_);
+	for (i = 0; i < x->numrows_; ++i) {
+		for (j = 0; j < x->numcols_; ++j) {
+			*jas_matrix_getref(y, i, j) = jas_matrix_get(x, i, j);
+		}
+	}
+	return y;
+}
+
+/******************************************************************************\
+* Bind operations.
+\******************************************************************************/
+
+void jas_seq2d_bindsub(jas_matrix_t *s, jas_matrix_t *s1, int xstart, int ystart,
+  int xend, int yend)
+{
+	jas_matrix_bindsub(s, s1, ystart - s1->ystart_, xstart - s1->xstart_,
+	  yend - s1->ystart_ - 1, xend - s1->xstart_ - 1);
+}
+
+void jas_matrix_bindsub(jas_matrix_t *mat0, jas_matrix_t *mat1, int r0, int c0,
+  int r1, int c1)
+{
+	int i;
+
+	if (mat0->data_) {
+		if (!(mat0->flags_ & JAS_MATRIX_REF)) {
+			jas_free(mat0->data_);
+		}
+		mat0->data_ = 0;
+		mat0->datasize_ = 0;
+	}
+	if (mat0->rows_) {
+		jas_free(mat0->rows_);
+		mat0->rows_ = 0;
+	}
+	mat0->flags_ |= JAS_MATRIX_REF;
+	mat0->numrows_ = r1 - r0 + 1;
+	mat0->numcols_ = c1 - c0 + 1;
+	mat0->maxrows_ = mat0->numrows_;
+	mat0->rows_ = jas_malloc(mat0->maxrows_ * sizeof(jas_seqent_t *));
+	for (i = 0; i < mat0->numrows_; ++i) {
+		mat0->rows_[i] = mat1->rows_[r0 + i] + c0;
+	}
+
+	mat0->xstart_ = mat1->xstart_ + c0;
+	mat0->ystart_ = mat1->ystart_ + r0;
+	mat0->xend_ = mat0->xstart_ + mat0->numcols_;
+	mat0->yend_ = mat0->ystart_ + mat0->numrows_;
+}
+
+/******************************************************************************\
+* Arithmetic operations.
+\******************************************************************************/
+
+int jas_matrix_cmp(jas_matrix_t *mat0, jas_matrix_t *mat1)
+{
+	int i;
+	int j;
+
+	if (mat0->numrows_ != mat1->numrows_ || mat0->numcols_ !=
+	  mat1->numcols_) {
+		return 1;
+	}
+	for (i = 0; i < mat0->numrows_; i++) {
+		for (j = 0; j < mat0->numcols_; j++) {
+			if (jas_matrix_get(mat0, i, j) != jas_matrix_get(mat1, i, j)) {
+				return 1;
+			}
+		}
+	}
+	return 0;
+}
+
+void jas_matrix_divpow2(jas_matrix_t *matrix, int n)
+{
+	int i;
+	int j;
+	jas_seqent_t *rowstart;
+	int rowstep;
+	jas_seqent_t *data;
+
+	rowstep = jas_matrix_rowstep(matrix);
+	for (i = matrix->numrows_, rowstart = matrix->rows_[0]; i > 0; --i,
+	  rowstart += rowstep) {
+		for (j = matrix->numcols_, data = rowstart; j > 0; --j,
+		  ++data) {
+			*data = (*data >= 0) ? ((*data) >> n) :
+			  (-((-(*data)) >> n));
+		}
+	}
+}
+
+void jas_matrix_clip(jas_matrix_t *matrix, jas_seqent_t minval, jas_seqent_t maxval)
+{
+	int i;
+	int j;
+	jas_seqent_t v;
+	jas_seqent_t *rowstart;
+	jas_seqent_t *data;
+	int rowstep;
+
+	rowstep = jas_matrix_rowstep(matrix);
+	for (i = matrix->numrows_, rowstart = matrix->rows_[0]; i > 0; --i,
+	  rowstart += rowstep) {
+		data = rowstart;
+		for (j = matrix->numcols_, data = rowstart; j > 0; --j,
+		  ++data) {
+			v = *data;
+			if (v < minval) {
+				*data = minval;
+			} else if (v > maxval) {
+				*data = maxval;
+			}
+		}
+	}
+}
+
+void jas_matrix_asr(jas_matrix_t *matrix, int n)
+{
+	int i;
+	int j;
+	jas_seqent_t *rowstart;
+	int rowstep;
+	jas_seqent_t *data;
+
+	assert(n >= 0);
+	rowstep = jas_matrix_rowstep(matrix);
+	for (i = matrix->numrows_, rowstart = matrix->rows_[0]; i > 0; --i,
+	  rowstart += rowstep) {
+		for (j = matrix->numcols_, data = rowstart; j > 0; --j,
+		  ++data) {
+			*data >>= n;
+		}
+	}
+}
+
+void jas_matrix_asl(jas_matrix_t *matrix, int n)
+{
+	int i;
+	int j;
+	jas_seqent_t *rowstart;
+	int rowstep;
+	jas_seqent_t *data;
+
+	rowstep = jas_matrix_rowstep(matrix);
+	for (i = matrix->numrows_, rowstart = matrix->rows_[0]; i > 0; --i,
+	  rowstart += rowstep) {
+		for (j = matrix->numcols_, data = rowstart; j > 0; --j,
+		  ++data) {
+			*data <<= n;
+		}
+	}
+}
+
+/******************************************************************************\
+* Code.
+\******************************************************************************/
+
+int jas_matrix_resize(jas_matrix_t *matrix, int numrows, int numcols)
+{
+	int size;
+	int i;
+
+	size = numrows * numcols;
+	if (size > matrix->datasize_ || numrows > matrix->maxrows_) {
+		return -1;
+	}
+
+	matrix->numrows_ = numrows;
+	matrix->numcols_ = numcols;
+
+	for (i = 0; i < numrows; ++i) {
+		matrix->rows_[i] = &matrix->data_[numcols * i];
+	}
+
+	return 0;
+}
+
+int jas_matrix_output(jas_matrix_t *matrix, FILE *out)
+{
+	int i;
+	int j;
+	jas_seqent_t x;
+
+	fprintf(out, "%d %d\n", jas_matrix_numrows(matrix), jas_matrix_numcols(matrix));
+	for (i = 0; i < jas_matrix_numrows(matrix); ++i) {
+		for (j = 0; j < jas_matrix_numcols(matrix); ++j) {
+			x = jas_matrix_get(matrix, i, j);
+			fprintf(out, "%ld", JAS_CAST(long, x));
+			if (j < jas_matrix_numcols(matrix) - 1) {
+				fprintf(out, " ");
+			}
+		}
+		fprintf(out, "\n");
+	}
+	return 0;
+}
+
+void jas_matrix_setall(jas_matrix_t *matrix, jas_seqent_t val)
+{
+	int i;
+	int j;
+	jas_seqent_t *rowstart;
+	int rowstep;
+	jas_seqent_t *data;
+
+	rowstep = jas_matrix_rowstep(matrix);
+	for (i = matrix->numrows_, rowstart = matrix->rows_[0]; i > 0; --i,
+	  rowstart += rowstep) {
+		for (j = matrix->numcols_, data = rowstart; j > 0; --j,
+		  ++data) {
+			*data = val;
+		}
+	}
+}
+
+jas_matrix_t *jas_matrix_input(FILE *in)
+{
+	jas_matrix_t *matrix;
+	int i;
+	int j;
+	long x;
+	int numrows;
+	int numcols;
+
+	if (fscanf(in, "%d %d", &numrows, &numcols) != 2)
+		return 0;
+	if (!(matrix = jas_matrix_create(numrows, numcols)))
+		return 0;
+
+	/* Get matrix data. */
+	for (i = 0; i < jas_matrix_numrows(matrix); i++) {
+		for (j = 0; j < jas_matrix_numcols(matrix); j++) {
+			if (fscanf(in, "%ld", &x) != 1) {
+				jas_matrix_destroy(matrix);
+				return 0;
+			}
+			jas_matrix_set(matrix, i, j, JAS_CAST(jas_seqent_t, x));
+		}
+	}
+
+	return matrix;
+}